Small RNA sequencing for secondary metabolite analysis in Persicaria minor

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Abdul Fatah A. Samad, Nazaruddin Nazaruddin, Muhammad Sajad, Jaeyres Jani, Abdul Munir Abdul Murad, Zamri Zainal, Ismanizan Ismail

2017 Genomics Data Vol. 13 Article Cited by 5 SDG 3SDG 17 Quartile

Abstract

Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected). © 2017

Affiliations

School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM Bangi, 43600, Selangor, Malaysia; Institute of Systems Biology, Universiti Kebangsaan Malaysia, UKM Bangi, 43600, Selangor, Malaysia; Department of Chemistry, Faculty of Mathematics and Natural Sciences, University of Syiah Kuala, Darussalam, Banda Aceh, 23111, Indonesia; BioEasy Sdn. Bhd. and ScienceVision Sdn. Bhd., Setia Alam, Seksyen U13, Shah Alam, 40170, Selangor, Malaysia; Department of Plant Breeding and Genetics, University College of Agriculture & Environmental Sciences, The Islamia University of Bahawalpur, Punjab, Pakistan

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